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\n \n\n \n \n Inaba, K.\n\n\n \n \n \n \n Regulatory Mechanism of Axonemal Dynein.\n \n \n \n\n\n \n\n\n\n In Handbook of Dynein. Jenny Stanford Publishing, 2 edition, 2019.\n Num Pages: 36\n\n\n\n
\n\n\n\n \n\n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@incollection{inaba_regulatory_2019,\n\tedition = {2},\n\ttitle = {Regulatory {Mechanism} of {Axonemal} {Dynein}},\n\tisbn = {978-0-429-02131-2},\n\tabstract = {This chapter describes the molecular compositions and the regulatory mechanism of axonemal dynein. It explores the molecular composition of axonemal dynein and the regulatory mechanisms of ciliary and flagellar motility. Axonemal dyneins are divided into two classes: outer-arm dyneins and inner-arm dyneins. Sperm flagella have been the sources for studying axonemal dyneins. The axonemal dyneins have been isolated from sperm of several animals, but those isolated from sea urchins and tunicates have been most widely studied. The outer-arm dynein from the ascidian Ciona intestinalis contains additional two or three intermediate chains (IC), termed IC4 and IC5. The activity of outer-arm dynein in sperm flagella is regulated by phosphorylation of the subunits, such as the Tctex2-related light chain. Inner-arm dyneins are structurally and functionally more diverse than outer-arm dynein. Structure and subunit composition of the inner-arm dynein has been less studied in metazoan species.},\n\tbooktitle = {Handbook of {Dynein}},\n\tpublisher = {Jenny Stanford Publishing},\n\tauthor = {Inaba, Kazuo},\n\tyear = {2019},\n\tnote = {Num Pages: 36},\n}\n\n
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\n This chapter describes the molecular compositions and the regulatory mechanism of axonemal dynein. It explores the molecular composition of axonemal dynein and the regulatory mechanisms of ciliary and flagellar motility. Axonemal dyneins are divided into two classes: outer-arm dyneins and inner-arm dyneins. Sperm flagella have been the sources for studying axonemal dyneins. The axonemal dyneins have been isolated from sperm of several animals, but those isolated from sea urchins and tunicates have been most widely studied. The outer-arm dynein from the ascidian Ciona intestinalis contains additional two or three intermediate chains (IC), termed IC4 and IC5. The activity of outer-arm dynein in sperm flagella is regulated by phosphorylation of the subunits, such as the Tctex2-related light chain. Inner-arm dyneins are structurally and functionally more diverse than outer-arm dynein. Structure and subunit composition of the inner-arm dynein has been less studied in metazoan species.\n
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\n \n\n \n \n Itou, T., Kanno, M., Suyama, Y., Inaba, K., & Aoki, M. N.\n\n\n \n \n \n \n \n Opening the black box: microspatial patterns of zoospore dispersal, parentage, and selfing in the kelp Ecklonia cava as revealed by microsatellite markers.\n \n \n \n \n\n\n \n\n\n\n Journal of Applied Phycology, 31(5): 3283–3294. October 2019.\n \n\n\n\n
\n\n\n\n \n \n \"OpeningPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n
@article{itou_opening_2019,\n\ttitle = {Opening the black box: microspatial patterns of zoospore dispersal, parentage, and selfing in the kelp \\textit{{Ecklonia} cava} as revealed by microsatellite markers},\n\tvolume = {31},\n\tissn = {0921-8971, 1573-5176},\n\tshorttitle = {Opening the black box},\n\turl = {http://link.springer.com/10.1007/s10811-019-01790-0},\n\tdoi = {10.1007/s10811-019-01790-0},\n\tlanguage = {en},\n\tnumber = {5},\n\turldate = {2021-07-27},\n\tjournal = {Journal of Applied Phycology},\n\tauthor = {Itou, Tomoko and Kanno, Manami and Suyama, Yoshihisa and Inaba, Kazuo and Aoki, Masakazu N.},\n\tmonth = oct,\n\tyear = {2019},\n\tpages = {3283--3294},\n}\n\n
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\n \n\n \n \n Jokura, K., Shibata, D., Yamaguchi, K., Shiba, K., Makino, Y., Shigenobu, S., & Inaba, K.\n\n\n \n \n \n \n \n CTENO64 Is Required for Coordinated Paddling of Ciliary Comb Plate in Ctenophores.\n \n \n \n \n\n\n \n\n\n\n Current Biology, 29(20): 3510–3516.e4. October 2019.\n \n\n\n\n
\n\n\n\n \n \n \"CTENO64Paper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{jokura_cteno64_2019,\n\ttitle = {{CTENO64} {Is} {Required} for {Coordinated} {Paddling} of {Ciliary} {Comb} {Plate} in {Ctenophores}},\n\tvolume = {29},\n\tissn = {09609822},\n\turl = {https://linkinghub.elsevier.com/retrieve/pii/S0960982219311091},\n\tdoi = {10.1016/j.cub.2019.08.059},\n\tlanguage = {en},\n\tnumber = {20},\n\turldate = {2021-07-27},\n\tjournal = {Current Biology},\n\tauthor = {Jokura, Kei and Shibata, Daisuke and Yamaguchi, Katsushi and Shiba, Kogiku and Makino, Yumiko and Shigenobu, Shuji and Inaba, Kazuo},\n\tmonth = oct,\n\tyear = {2019},\n\tpages = {3510--3516.e4},\n}\n\n
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\n \n\n \n \n Kinoshita-Terauchi, N., Shiba, K., Terauchi, M., Romero, F., Ramírez-Gómez, H. V., Yoshida, M., Motomura, T., Kawai, H., & Nishigaki, T.\n\n\n \n \n \n \n \n High potassium seawater inhibits ascidian sperm chemotaxis, but does not affect the male gamete chemotaxis of a brown alga.\n \n \n \n \n\n\n \n\n\n\n Zygote, 27(4): 225–231. August 2019.\n \n\n\n\n
\n\n\n\n \n \n \"HighPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{kinoshita-terauchi_high_2019,\n\ttitle = {High potassium seawater inhibits ascidian sperm chemotaxis, but does not affect the male gamete chemotaxis of a brown alga},\n\tvolume = {27},\n\tissn = {0967-1994, 1469-8730},\n\turl = {https://www.cambridge.org/core/product/identifier/S0967199419000224/type/journal_article},\n\tdoi = {10.1017/S0967199419000224},\n\tabstract = {Summary\n            \n              Male gamete chemotaxis towards the female gamete is a general strategy to facilitate the sexual reproduction in many marine eukaryotes. Biochemical studies of chemoattractants for male gametes of brown algae have advanced in the 1970s and 1980s, but the molecular mechanism of male gamete responses to the attractants remains elusive. In sea urchin, a K\n              +\n              channel called the tetraKCNG channel plays a fundamental role in sperm chemotaxis and inhibition of K\n              +\n              efflux through this channel by high K\n              +\n              seawater blocks almost all cell responses to the chemoattractant. This signalling mechanism could be conserved in marine invertebrates as tetraKCNG channels are conserved in the marine invertebrates that exhibit sperm chemotaxis. We confirmed that high K\n              +\n              seawater also inhibited sperm chemotaxis in ascidian,\n              Ciona intestinalis\n              (\n              robusta\n              ), in this study. Conversely, the male gamete chemotaxis towards the female gamete of a brown alga,\n              Mutimo cylindricus\n              , was preserved even in high K\n              +\n              seawater. This result indicates that none of the K\n              +\n              channels is essential for male gamete chemotaxis in the brown alga, suggesting that the signalling mechanism for chemotaxis in this brown alga is quite different from that of marine invertebrates. Correlated to this result, we revealed that the channels previously proposed as homologues of tetraKCNG in brown algae have a distinct domain composition from that of the tetraKCNG. Namely, one of them possesses two repeats of the six transmembrane segments (diKCNG) instead of four. The structural analysis suggests that diKCNG is a cyclic nucleotide-modulated and/or voltage-gated K\n              +\n              channel.},\n\tlanguage = {en},\n\tnumber = {4},\n\turldate = {2021-07-27},\n\tjournal = {Zygote},\n\tauthor = {Kinoshita-Terauchi, Nana and Shiba, Kogiku and Terauchi, Makoto and Romero, Francisco and Ramírez-Gómez, Héctor Vincente and Yoshida, Manabu and Motomura, Taizo and Kawai, Hiroshi and Nishigaki, Takuya},\n\tmonth = aug,\n\tyear = {2019},\n\tpages = {225--231},\n}\n\n
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\n Summary Male gamete chemotaxis towards the female gamete is a general strategy to facilitate the sexual reproduction in many marine eukaryotes. Biochemical studies of chemoattractants for male gametes of brown algae have advanced in the 1970s and 1980s, but the molecular mechanism of male gamete responses to the attractants remains elusive. In sea urchin, a K + channel called the tetraKCNG channel plays a fundamental role in sperm chemotaxis and inhibition of K + efflux through this channel by high K + seawater blocks almost all cell responses to the chemoattractant. This signalling mechanism could be conserved in marine invertebrates as tetraKCNG channels are conserved in the marine invertebrates that exhibit sperm chemotaxis. We confirmed that high K + seawater also inhibited sperm chemotaxis in ascidian, Ciona intestinalis ( robusta ), in this study. Conversely, the male gamete chemotaxis towards the female gamete of a brown alga, Mutimo cylindricus , was preserved even in high K + seawater. This result indicates that none of the K + channels is essential for male gamete chemotaxis in the brown alga, suggesting that the signalling mechanism for chemotaxis in this brown alga is quite different from that of marine invertebrates. Correlated to this result, we revealed that the channels previously proposed as homologues of tetraKCNG in brown algae have a distinct domain composition from that of the tetraKCNG. Namely, one of them possesses two repeats of the six transmembrane segments (diKCNG) instead of four. The structural analysis suggests that diKCNG is a cyclic nucleotide-modulated and/or voltage-gated K + channel.\n
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\n \n\n \n \n Kinoshita-Terauchi, N., Shiba, K., Umezawa, T., Matsuda, F., Motomura, T., & Inaba, K.\n\n\n \n \n \n \n \n A brown algal sex pheromone reverses the sign of phototaxis by cAMP/Ca2+-dependent signaling in the male gametes of Mutimo cylindricus (Cutleriaceae).\n \n \n \n \n\n\n \n\n\n\n Journal of Photochemistry and Photobiology B: Biology, 192: 113–123. March 2019.\n \n\n\n\n
\n\n\n\n \n \n \"APaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n
@article{kinoshita-terauchi_brown_2019,\n\ttitle = {A brown algal sex pheromone reverses the sign of phototaxis by {cAMP}/{Ca2}+-dependent signaling in the male gametes of \\textit{{Mutimo} cylindricus} ({Cutleriaceae})},\n\tvolume = {192},\n\tissn = {10111344},\n\turl = {https://linkinghub.elsevier.com/retrieve/pii/S1011134418309679},\n\tdoi = {10.1016/j.jphotobiol.2019.01.010},\n\tlanguage = {en},\n\turldate = {2021-07-27},\n\tjournal = {Journal of Photochemistry and Photobiology B: Biology},\n\tauthor = {Kinoshita-Terauchi, Nana and Shiba, Kogiku and Umezawa, Taiki and Matsuda, Fuyuhiko and Motomura, Taizo and Inaba, Kazuo},\n\tmonth = mar,\n\tyear = {2019},\n\tpages = {113--123},\n}\n\n
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\n \n\n \n \n Nakayama, T., Nomura, M., Takano, Y., Tanifuji, G., Shiba, K., Inaba, K., Inagaki, Y., & Kawata, M.\n\n\n \n \n \n \n \n Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host.\n \n \n \n \n\n\n \n\n\n\n Proceedings of the National Academy of Sciences, 116(32): 15973–15978. August 2019.\n \n\n\n\n
\n\n\n\n \n \n Paper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
\n
@article{nakayama_single-cell_2019,\n\ttitle = {Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host},\n\tvolume = {116},\n\tissn = {0027-8424, 1091-6490},\n\turl = {http://www.pnas.org/lookup/doi/10.1073/pnas.1902538116},\n\tdoi = {10.1073/pnas.1902538116},\n\tabstract = {Cyanobacteria are one of the most important contributors to oceanic primary production and survive in a wide range of marine habitats. Much effort has been made to understand their ecological features, diversity, and evolution, based mainly on data from free-living cyanobacterial species. In addition, symbiosis has emerged as an important lifestyle of oceanic microbes and increasing knowledge of cyanobacteria in symbiotic relationships with unicellular eukaryotes suggests their significance in understanding the global oceanic ecosystem. However, detailed characteristics of these cyanobacteria remain poorly described. To gain better insight into marine cyanobacteria in symbiosis, we sequenced the genome of cyanobacteria collected from a cell of a pelagic dinoflagellate that is known to host cyanobacterial symbionts within a specialized chamber. Phylogenetic analyses using the genome sequence revealed that the cyanobacterium represents an underdescribed lineage within an extensively studied, ecologically important group of marine cyanobacteria. Metagenomic analyses demonstrated that this cyanobacterial lineage is globally distributed and strictly coexists with its host dinoflagellates, suggesting that the intimate symbiotic association allowed the cyanobacteria to escape from previous metagenomic studies. Furthermore, a comparative analysis of the protein repertoire with related species indicated that the lineage has independently undergone reductive genome evolution to a similar extent as\n              Prochlorococcus\n              , which has the most reduced genomes among free-living cyanobacteria. Discovery of this cyanobacterial lineage, hidden by its symbiotic lifestyle, provides crucial insights into the diversity, ecology, and evolution of marine cyanobacteria and suggests the existence of other undiscovered cryptic cyanobacterial lineages.},\n\tlanguage = {en},\n\tnumber = {32},\n\turldate = {2021-07-27},\n\tjournal = {Proceedings of the National Academy of Sciences},\n\tauthor = {Nakayama, Takuro and Nomura, Mami and Takano, Yoshihito and Tanifuji, Goro and Shiba, Kogiku and Inaba, Kazuo and Inagaki, Yuji and Kawata, Masakado},\n\tmonth = aug,\n\tyear = {2019},\n\tpages = {15973--15978},\n}\n\n
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\n Cyanobacteria are one of the most important contributors to oceanic primary production and survive in a wide range of marine habitats. Much effort has been made to understand their ecological features, diversity, and evolution, based mainly on data from free-living cyanobacterial species. In addition, symbiosis has emerged as an important lifestyle of oceanic microbes and increasing knowledge of cyanobacteria in symbiotic relationships with unicellular eukaryotes suggests their significance in understanding the global oceanic ecosystem. However, detailed characteristics of these cyanobacteria remain poorly described. To gain better insight into marine cyanobacteria in symbiosis, we sequenced the genome of cyanobacteria collected from a cell of a pelagic dinoflagellate that is known to host cyanobacterial symbionts within a specialized chamber. Phylogenetic analyses using the genome sequence revealed that the cyanobacterium represents an underdescribed lineage within an extensively studied, ecologically important group of marine cyanobacteria. Metagenomic analyses demonstrated that this cyanobacterial lineage is globally distributed and strictly coexists with its host dinoflagellates, suggesting that the intimate symbiotic association allowed the cyanobacteria to escape from previous metagenomic studies. Furthermore, a comparative analysis of the protein repertoire with related species indicated that the lineage has independently undergone reductive genome evolution to a similar extent as Prochlorococcus , which has the most reduced genomes among free-living cyanobacteria. Discovery of this cyanobacterial lineage, hidden by its symbiotic lifestyle, provides crucial insights into the diversity, ecology, and evolution of marine cyanobacteria and suggests the existence of other undiscovered cryptic cyanobacterial lineages.\n
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\n \n\n \n \n Nomura, M., Atsuji, K., Hirose, K., Shiba, K., Yanase, R., Nakayama, T., Ishida, K., & Inaba, K.\n\n\n \n \n \n \n \n Microtubule stabilizer reveals requirement of Ca2+-dependent conformational changes of microtubules for rapid coiling of haptonema in haptophyte algae.\n \n \n \n \n\n\n \n\n\n\n Biology Open,bio.036590. January 2019.\n \n\n\n\n
\n\n\n\n \n \n \"MicrotubulePaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n  \n \n abstract \n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{nomura_microtubule_2019,\n\ttitle = {Microtubule stabilizer reveals requirement of {Ca2}+-dependent conformational changes of microtubules for rapid coiling of haptonema in haptophyte algae},\n\tissn = {2046-6390},\n\turl = {https://journals.biologists.com/bio/article/doi/10.1242/bio.036590/259340/Microtubule-stabilizer-reveals-requirement-of-Ca2},\n\tdoi = {10.1242/bio.036590},\n\tabstract = {A haptonema is an elongated microtubule-based motile organelle uniquely present in haptophytes. The most notable and rapid movement of a haptonema is “coiling”, which occurs within a few milliseconds following mechanical stimulation in an unknown motor-independent mechanism. Here, we analyzed the coiling process in detail by high-speed filming and showed that haptonema coiling was initiated by left-handed twisting of the haptonema, followed by writhing to form a helix from the distal tip. On recovery from a mechanical stimulus, the helix slowly uncoiled from the proximal region. Electron microscopy showed that the seven microtubules in a haptonema were arranged mostly in parallel but that one of the microtubules often wound around the others in the extended state. A microtubule stabilizer, paclitaxel, inhibited coiling and induced right-handed twisting of the haptonema in the absence of Ca2+, suggesting changes in the microtubule surface lattice. Addition of Ca2+ caused bend propagation toward the proximal region. These results indicate that switching microtubule conformation, possibly with the aid of Ca2+-binding microtubule-associated proteins is responsible for rapid haptonematal coiling.},\n\tlanguage = {en},\n\turldate = {2021-07-27},\n\tjournal = {Biology Open},\n\tauthor = {Nomura, Mami and Atsuji, Kohei and Hirose, Keiko and Shiba, Kogiku and Yanase, Ryuji and Nakayama, Takeshi and Ishida, Ken-ichiro and Inaba, Kazuo},\n\tmonth = jan,\n\tyear = {2019},\n\tpages = {bio.036590},\n}\n\n
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\n A haptonema is an elongated microtubule-based motile organelle uniquely present in haptophytes. The most notable and rapid movement of a haptonema is “coiling”, which occurs within a few milliseconds following mechanical stimulation in an unknown motor-independent mechanism. Here, we analyzed the coiling process in detail by high-speed filming and showed that haptonema coiling was initiated by left-handed twisting of the haptonema, followed by writhing to form a helix from the distal tip. On recovery from a mechanical stimulus, the helix slowly uncoiled from the proximal region. Electron microscopy showed that the seven microtubules in a haptonema were arranged mostly in parallel but that one of the microtubules often wound around the others in the extended state. A microtubule stabilizer, paclitaxel, inhibited coiling and induced right-handed twisting of the haptonema in the absence of Ca2+, suggesting changes in the microtubule surface lattice. Addition of Ca2+ caused bend propagation toward the proximal region. These results indicate that switching microtubule conformation, possibly with the aid of Ca2+-binding microtubule-associated proteins is responsible for rapid haptonematal coiling.\n
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\n \n\n \n \n Sasaki, K., Shiba, K., Nakamura, A., Kawano, N., Satouh, Y., Yamaguchi, H., Morikawa, M., Shibata, D., Yanase, R., Jokura, K., Nomura, M., Miyado, M., Takada, S., Ueno, H., Nonaka, S., Baba, T., Ikawa, M., Kikkawa, M., Miyado, K., & Inaba, K.\n\n\n \n \n \n \n \n Calaxin is required for cilia-driven determination of vertebrate laterality.\n \n \n \n \n\n\n \n\n\n\n Communications Biology, 2(1): 226. December 2019.\n \n\n\n\n
\n\n\n\n \n \n \"CalaxinPaper\n  \n \n\n \n \n doi\n  \n \n\n \n link\n  \n \n\n bibtex\n \n\n \n\n \n\n \n \n \n \n \n \n \n\n  \n \n \n\n\n\n
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@article{sasaki_calaxin_2019,\n\ttitle = {Calaxin is required for cilia-driven determination of vertebrate laterality},\n\tvolume = {2},\n\tissn = {2399-3642},\n\turl = {http://www.nature.com/articles/s42003-019-0462-y},\n\tdoi = {10.1038/s42003-019-0462-y},\n\tlanguage = {en},\n\tnumber = {1},\n\turldate = {2021-07-27},\n\tjournal = {Communications Biology},\n\tauthor = {Sasaki, Keita and Shiba, Kogiku and Nakamura, Akihiro and Kawano, Natsuko and Satouh, Yuhkoh and Yamaguchi, Hiroshi and Morikawa, Motohiro and Shibata, Daisuke and Yanase, Ryuji and Jokura, Kei and Nomura, Mami and Miyado, Mami and Takada, Shuji and Ueno, Hironori and Nonaka, Shigenori and Baba, Tadashi and Ikawa, Masahito and Kikkawa, Masahide and Miyado, Kenji and Inaba, Kazuo},\n\tmonth = dec,\n\tyear = {2019},\n\tpages = {226},\n}\n\n
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